Debian Science Typesetting packages

AUCTeX is a comprehensive customizable integrated environment for writing input files for TeX/LaTeX/ConTeXt/Texinfo using GNU Emacs. Currently XEmacs ships with its own AUCTeX version.

It supports processing source files by running TeX and related tools (such as output filters, post processors for generating indices and bibliographies, and viewers) from inside Emacs. AUCTeX allows browsing through the errors reported by TeX, while it moves the cursor directly to the reported error, and displays some documentation for that particular error. This will even work when the document is spread over several files.

AUCTeX can automatically indent LaTeX source, either line by line or for an entire document, and has a special outline feature which can greatly assist in getting an overview of a document.

AUCTeX is written entirely in Emacs Lisp, and may therefore be enhanced with new features for specific needs. It comes with a large range of handy Emacs macros. It is a GNU project, and documentation for all its features is accessible via the Emacs info browser.

The biblatex package by Philipp Lehman is becoming the definitive citation management tool for LaTeX users. Biblatex has relied on the venerable BibTeX program only for sorting and generating a very generic .bbl file without any formatting instruction. Everything else is taken care of by biblatex, which provides a powerful and flexible macro interface for authors of citation styles.

Biber offers a large superset of BibTeX functionality for BibLaTeX users. In addition it offers full UTF-8 (Unicode 6.0) capabilities, fully customisable sorting, output to GraphViz to help visualise complex crossrefs, support for remote data sources, structural validation of the data against the (customisable) data model, and a lot more.

Bibus is a bibliographic database which has been developed with LibreOffice/ OpenOffice.org in mind. It can directly insert citations and format the bibliographic index in an open OpenOffice.org Writer document. The main features are

• hierarchical organization of the references with user-defined keys
• designed for multiuser-environments (share databases between users)
• a search engine supporting live queries
• on-line PubMed access
• import of PubMed (Medline), EndNote/Refer, RIS and BibTeX records.

Bibus will use an SQLite-database by default for storage (via the SQLite3 module available in Python >2.5). But it also supports MySQL-databases. If you want to use a MySQL-database, make sure, that you have the python-mysqldb package installed.

Convert between the following bibliographic data formats: BibTeX, COPAC, EndNote refer, EndNote XML, Pubmed XML, ISI web of science, US Library of Congress MODS XML, RIS, and Word 2007 bibliography.

This package provides command line tools bib2xml, copac2xml, end2xml endx2xml, isi2xml, med2xml, ris2xml which convert to MODS XML format, modsclean which reformats MODS XML, and a matching set of commands xml2ads, xml2bib, xml2end, xml2isi, xml2ris, xml2wordbib which convert from MODS XML.

cb2bib is a program to extract bibliographic references from unformatted and non standard sources, like:

• email alerts;
• journal Web pages;
• and most interestingly PDF files.

Output references are written to BibTeX-formatted files. Other features include:

• article files can be linked and renamed by dragging them onto the cb2Bib window;
• editing and browsing BibTeX files;
• citing references, searching references and the full contents of the referenced documents;
• inserting bibliographic metadata to documents;
• writing short notes that interrelate several references.

Dia is an editor for diagrams, graphs, charts etc. There is support for UML static structure diagrams (class diagrams), Entity-Relationship diagrams, network diagrams and much more. Diagrams can be exported to postscript and many other formats.

Debian GNU/Linux is widely used at universities to do research and to write papers with LaTeX. The package diploma contains examples which illustrate the possible ways to do this effectively with Debian GNU/Linux. Each example consists of a source tree where you can do "make" in the top level directory and then the source code is compiled, the measurement data are processed, and the results are converted into nice figures. Then the text is processed and combined with the figures to a print file.

FeynMF is a LaTeX package for easy drawing of professional-quality Feynman diagrams, illustrations that depict the fundamental interactions of subatomic particles. The diagrams may be created using either the Metafont or MetaPost programs. FeynMF lays out most diagrams satisfactorily from the structure of the graph without any need for manual intervention. Nevertheless all the power of Metafont or MetaPost is available for more obscure cases.

Note that you will need the texlive-metapost package in order to use the MetaPost-based version of FeynMF.

A set of utilities for manipulating DSC compliant postscript. The following programs are included:

impose: A preprocessor to pstops for creating 2-up printouts. It tries to remove white space from the printout by probing the original postscript for the printed area's bounding box. This makes the output more esthetic than a simplistic layout of non-cropped original pages.

bboxx: Extracts the bounding boxes of a postscript file, with the option of entering the bounding box into the file. This program uses the ghostscript bbox device.

fixtd: Sets options in a Postscript file asking the printer to turn on tumbling or duplex printing.

psbl: Rearranges pages in a file to create booklets.

JabRef is a graphical Java application for editing BibTeX (.bib) databases. JabRef lets you organize your entries into overlapping logical groups, and with a single click limit your view to a single group or an intersection or union of several groups. You can customize the entry information shown in the main window, and sort by any of the standard BibTeX fields. JabRef can autogenerate BibTeX keys for your entries. JabRef also lets you easily link to PDF or web sources for your reference entries.

JabRef can import from and export to several formats, and you can customize export filters. JabRef can be run as a command line application to convert from any import format to any export format.

JEuclid is a complete MathML rendering solution, consisting of:

• A MathViewer application
• Command line converters from MathML to other formats
• An ant task for automated conversion
• Display components for AWT and Swing
• A component for Apache Cocoon

This package contains the Swing MathViewer application.

An application to manage bibliography databases in the BibTeX format. KBibTeX can be used as a standalone program, but can also be embedded into other KDE applications (e.g. as bibliography editor into Kile).

KBibTeX can query online resources (e.g. Google scholar) via customizable search URLs. It is also able to import complete datasets from NCBI Pubmed. It also supports tagging references with keywords and manages references to local files.

BibTeX files can be exported into HTML, XML, PDF, PS and RTF format using a number of citation styles.

latexdiff compares two LaTeX files and marks up significant differences between them (i.e. a diff for LaTeX files). It generates a new LaTeX file containing the annotated differences.

Various options are available for visual markup using standard LaTeX packages such as 'color.sty'. Changes not directly affecting visible text, for example in formatting commands, are still marked in the LaTeX source.

A rudimentary revision facilility is provided by another Perl script, 'latexrevise', which accepts or rejects all changes. Manual editing of the difference file can be used to override this default behaviour and accept or reject selected changes only.

JLaTeXmath library provides a set of Java classes for displaying (complex) mathematical formulas as part of a Java application. Some use cases are:

• Displaying text with embedded formulas (in an editor pane, a JavaHelp page, ...)
• Make a combo box which provides the user with a choice between various formulas.
• Have a slider with ticks that display their values not as decimal numbers, but as exact values, e.g., fractions, square roots or any combination of these.
• Display the formula together with the graph of a function.

LyX is an almost WYSIWYG-frontend for LaTeX. It makes the power and typesetting quality of LaTeX available for people who are used to word processors. Since LyX supports LaTeX's concept of general mark-ups, it is even easier and faster to create professional quality documents with it than with usual word processors. It is also possible to use LaTeX commands within LyX, so nothing of LaTeX's power is lost.

You can extend the functionality of LyX by installing these packages:

• chktex: check for typographical errors
• dvipost: display tracked changes in DVI format output
• gnuhtml2latex: import HTML documents
• groff: improved table formatting in plain text exports
• librsvg2-bin, inkscape: use the SVG image format in LyX documents
• linuxdoc-tools: export SGML LinuxDoc documents
• mythes-*: use the OpenOffice.org/LibreOffice Thesaurus
• noweb: import noweb files
• rcs: integrated version control
• sgmltools-lite: export SGML DocBook documents
• texlive-xetex, etoolbox: use the XeTeX typesetting system
• wv: import MS Word documents

Mlpost is an OCaml library for scientific drawing. It relies on Metapost, giving the possibility to include (La)TeX fragments. Mlpost users can use the full power of OCaml to generate their diagrams, including static typing and the possibility to use any OCaml library. Moreover, Mlpost promotes a declarative style quite different from existing tools.

This package contains a command-line tool to ease the generation of PostScript or PDF figures directly from .ml files.

It currently supports BibTeX, Medline, Ovid and Refer files. It is useful for viewing, editing and searching, but also to convert bibliographic databases into HTML pages for example.

Yelp (part of GNOME) is required to view the Pybliographic manual from within the GUI.

Referencer is a GNOME application to organise documents or references, and ultimately generate a BibTeX bibliography file. Referencer includes a number of features to make this process easier:

• Automatic metadata retrieval from PubMed, CrossRef and ArXiv
• Smart web links
• Import from BibTeX, Reference Manager and EndNote
• Tagging

Sketch is a simple system for producing line drawings of three-dimensional objects and scenes. Sketch is intended to produce finely wrought, mathematically-based illustrations with no extraneous detail and be able to easily overlay TeX math and text. The input language is reminiscent of PSTricks, so will be easy to learn for current PSTricks users. It generates either PSTricks or TikZ/PGF code as output.

Note that this package is not the interactive vector drawing program now known as skencil.

The TeX Live software distribution offers a complete TeX system. It encompasses programs for typesetting, previewing and printing of TeX documents in many different languages, and a large collection of TeX macros and font libraries.

This metapackage provides a decent selection of the TeX Live packages which should suffice for the most common tasks.

The distribution also includes extensive general documentation about TeX, as well as the documentation accompanying the included software packages.

Additional BibTeX styles and bibliography data(bases), notably including

  BibLaTeX.

This package includes the following CTAN packages:

 aichej -- Bibliography style file for the AIChE Journal.
 amsrefs -- A LaTeX-based replacement for BibTeX.
 apacite -- Citation style following the rules of the APA.
 apalike2 -- Bibliography style that approaches APA requirements.
 beebe --
 bibarts -- "Arts"-style bibliographical information.
 bibexport -- Extract a BibTeX file based on a .aux file.
 bibhtml -- BibTeX support for HTML files.
 biblatex -- Bibliographies in LaTeX using BibTeX for sorting only.
 biblatex-apa -- Biblatex citation and reference style for APA.
 biblatex-bwl --
 biblatex-caspervector -- A simple citation style for Chinese users.
 biblatex-chem -- A set of biblatex implementations of chemistry-related
  bibliography styles.
 biblatex-chicago -- Chicago style files for biblatex.
 biblatex-dw -- Humanities styles for biblatex.
 biblatex-fiwi -- Biblatex styles for use in German humanities.
 biblatex-gost -- Biblatex support for GOST standard bibliographies.
 biblatex-historian -- A Biblatex style.
 biblatex-ieee -- Ieee style files for biblatex.
 biblatex-juradiss -- Biblatex stylefiles for German law thesis.
 biblatex-luh-ipw -- Biblatex styles for social sciences.
 biblatex-mla -- MLA style files for biblatex.
 biblatex-musuos -- A biblatex style for citations in musuos.cls.
 biblatex-nature -- Biblatex support for Nature.
 biblatex-nejm -- Biblatex style for the New England Journal of Medicine
  (NEJM).
 biblatex-philosophy -- Styles for using biblatex for work in philosophy.
 biblatex-phys -- A biblatex implementation of the AIP and APS bibliography
  style.
 biblatex-publist -- BibLaTeX bibliography support for publication lists.
 biblatex-science -- Biblatex implementation of the Science bibliography
  style.
 biblatex-swiss-legal -- Bibliography and citation styles following Swiss
  legal practice.
 biblatex-trad -- "Traditional" BibTeX styles with BibLaTeX.
 biblist -- Print a BibTeX database.
 bibtopic -- Include multiple bibliographies in a document.
 bibtopicprefix -- Prefix references to bibliographies produced by bibtopic.
 bibunits -- Multiple bibliographies in one document.
 breakcites -- Ensure that multiple citations may break at line end.
 cell -- Bibliography style for Cell.
 chbibref -- Change the Bibliography/References title.
 chicago -- A "Chicago" bibliography style.
 chicago-annote -- Chicago-based annotated BibTeX style.
 chembst -- A collection of BibTeX files for chemistry journals.
 chscite -- Bibliography style for Chalmers University of Technology.
 collref -- Collect blocks of references into a single reference.
 compactbib -- Multiple thebibliography environments.
 custom-bib -- Customised BibTeX styles.
 din1505 -- Bibliography styles for German texts.
 dk-bib -- Danish variants of standard BibTeX styles.
 doipubmed -- Special commands for use in bibliographies.
 fbs -- BibTeX style for Frontiers in Bioscience.
 figbib -- Organize figure databases with BibTeX.
 footbib -- Bibliographic references as footnotes.
 francais-bst -- Bibliographies conforming to French typographic standards.
 geschichtsfrkl -- BibLaTeX style for historians.
 harvard -- Harvard citation package for use with LaTeX 2e.
 harvmac -- Macros for scientific articles.
 historische-zeitschrift -- Biblatex style for the journal 'Historische
  Zeitschrift'
 ijqc -- BibTeX style file for the Intl. J. Quantum Chem.
 inlinebib -- Citations in footnotes.
 iopart-num -- Numeric citation style for IOP journals.
 jneurosci -- BibTeX style for the Journal of Neuroscience.
 jurabib -- Extended BibTeX citation support for the humanities and legal
  texts.
 ksfh_nat --
 listbib -- Lists contents of BibTeX files.
 logreq -- Support for automation of the LaTeX workflow.
 margbib -- Display bibitem tags in the margins.
 multibib -- Multiple bibliographies within one document.
 multibibliography -- Multiple versions of a bibliography, with different
  sort orders.
 munich -- An alternative authordate bibliography style.
 notes2bib -- Integrating notes into the bibliography.
 oscola -- BibLaTeX style for the Oxford Standard for the Citation of Legal
  Authorities.
 perception -- BibTeX style for the journal Perception.
 pnas2009 -- Bibtex style for PNAS.
 rsc -- BibTeX style for use with RSC journals.
 showtags -- Print the tags of bibliography entries.
 sort-by-letters -- Bibliography styles for alphabetic sorting.
 splitbib -- Split and reorder your bibliography.
 uni-wtal-ger --
 uni-wtal-lin -- Citation style for linguistic studies at the University of
  Wuppertal.
 urlbst -- Web support for BibTeX.
 usebib -- A simple bibloography processor.
 vak -- BibTeX style for Russian Theses, books, etc.
 xcite -- Use citation keys from a different document.

This package includes the following CTAN packages:

 12many -- Generalising mathematical index sets.
 amstex -- American Mathematical Society plain TeX macros.
 backnaur -- Typeset Backus Naur Form definitions.
 binomexp -- Calculate Pascal's triangle.
 boldtensors -- Bold latin and greek characters through simple prefix
  characters.
 bosisio -- A collection of packages by Francesco Bosisio.
 bropd -- Simplified brackets and differentials in LaTeX.
 ccfonts -- Support for Concrete text and math fonts in LaTeX.
 commath -- Mathematics typesetting support.
 concmath -- Concrete Math fonts.
 concrete -- Concrete Roman fonts.
 eqnarray -- More generalised equation arrays with numbering.
 extarrows -- Extra Arrows beyond those provided in AMSmath
 extpfeil -- Extensible arrows in mathematics.
 faktor -- Typeset quotient structures with LaTeX.
 ionumbers -- Restyle numbers in maths mode.
 isomath -- Mathematics style for science and technology.
 mathcomp -- Text symbols in maths mode.
 mattens -- Matrices/tensor typesetting.
 mhequ -- Multicolumn equations, tags, labels, sub-numbering.
 multiobjective -- Symbols for multibojective optimisation etc.
 nath -- Natural mathematics notation.
 ot-tableau -- Optimality Theory tableaux in LaTeX.
 oubraces -- Braces over and under a formula.
 proba -- Shortcuts commands to symbols used in probability texts.
 rec-thy -- Commands to typeset recursion theory papers.
 shuffle -- A symbol for the shuffle product.
 skmath -- Extensions to the maths command repertoir.
 statex -- Statistics style.
 statex2 -- Statistics style.
 stmaryrd -- St Mary Road symbols for theoretical computer science.
 subsupscripts -- A range of sub- and superscript commands.
 susy -- Macros for SuperSymmetry-related work.
 syllogism -- Typeset syllogisms in LaTeX.
 synproof -- Easy drawing of syntactic proofs.
 tablor -- Create tables of signs and of variations.
 tensor -- Typeset tensors.
 tex-ewd -- Macros to typeset calculational proofs and programs in
  Dijkstra's style.
 thmbox -- Decorate theorem statements.
 turnstile -- Typeset the (logic) turnstile notation.
 unicode-math -- Unicode mathematics support for XeTeX and LuaTeX.
 venn -- Creating Venn diagrams with MetaPost.
 yhmath -- Extended maths fonts for LaTeX.
 ytableau -- Many-featured Young tableaux and Young diagrams.

This package includes the following CTAN packages:

 IEEEconf -- Macros for IEEE conference proceedings.
 IEEEtran -- Document class for IEEE Transactions journals and conferences.
 aastex -- Macros for Manuscript Preparation for AAS Journals.
 abntex2 -- Typeset technical and scientific Brazilian documents based on
  ABNT rules.
 acmconf -- Class for ACM conference proceedings.
 active-conf -- Class for typesetting ACTIVE conference papers.
 adfathesis -- Australian Defence Force Academy thesis format.
 afthesis -- Air Force Institute of Technology thesis class.
 aguplus -- Styles for American Geophysical Union.
 aiaa -- Typeset AIAA conference papers.
 ametsoc -- Official American Meteorological Society Latex Template.
 anufinalexam -- LaTeX document shell for ANU final exam
 aomart -- Typeset articles for the Annals of Mathematics.
 apa -- American Psychological Association format.
 apa6 -- Format documents in APA style (6th edition).
 apa6e -- Format manuscripts to APA 6th edition guidelines.
 arsclassica -- A different view of the ClassicThesis package.
 articleingud -- LaTeX class for articles published in INGENIERIA review.
 asaetr -- Transactions of the ASAE.
 ascelike -- Bibliography style for the ASCE.
 beamer-FUBerlin -- Beamer, using the style of FU Berlin.
 bgteubner -- Class for producing books for the publisher "Teubner Verlag".
 cascadilla -- Typeset papers conforming to the stylesheet of the Cascadilla
  Proceedings Project.
 chem-journal -- Various BibTeX formats for journals in Chemistry.
 classicthesis -- A "classically styled" thesis package.
 cmpj -- Style for the journal Condensed Matter Physics.
 confproc -- A set of tools for generating conference proceedings.
 ebook --
 ebsthesis -- Typesetting theses for economics
 ejpecp -- Class for EJP and ECP.
 elbioimp -- A LaTeX document class for the Journal of Electrical
  Bioimpedance.
 elsarticle -- Class for articles for submission to Elsevier journals.
 elteikthesis -- Thesis class for ELTE University Informatics wing.
 erdc -- Style for Reports by US Army Corps of Engineers.
 estcpmm -- Style for Munitions Management Project Reports.
 fbithesis -- Computer Science thesis class for University of Dortmund.
 fcltxdoc -- Macros for use in the author's documentation.
 gaceta -- A class to typeset La Gaceta de la RSME.
 gatech-thesis -- Georgia Institute of Technology thesis class
 har2nat -- Replace the harvard package with natbib.
 hobete -- Unofficial beamer theme for the University of Hohenheim.
 icsv -- Class for typesetting articles for the ICSV conference.
 ieeepes -- IEEE Power Engineering Society Transactions.
 ijmart -- LaTeX Class for the Israel Journal of Mathematics.
 imac -- International Modal Analysis Conference format.
 imtekda -- IMTEK thesis class.
 jmlr -- Class files for the Journal of Machine Learning Research.
 jpsj -- Document Class for Journal of the Physical Society of Japan.
 kdgdocs -- Document classes for Karel de Grote University College.
 kluwer --
 lps -- Class for "Logic and Philosophy of Science".
 matc3 -- Commands for MatematicaC3 textbooks.
 matc3mem -- Class for MatematicaC3 textbooks.
 mentis -- A basis for books to be published by Mentis publishers.
 msu-thesis -- Class for Michigan State University Master's and PhD theses.
 musuos -- Typeset papers for the department of music, Osnabruck.
 muthesis -- Classes for University of Manchester Dept of Computer Science.
 nature -- Prepare papers for the journal Nature.
 nddiss -- Notre Dame Dissertation format class.
 nih -- A class for NIH grant applications.
 nostarch -- LaTeX class for No Starch Press.
 nrc -- Class for the NRC technical journals.
 onrannual -- Class for Office of Naval Research Ocean Battlespace Sensing
  annual report.
 opteng -- SPIE Optical Engineering and OE Letters manuscript template.
 philosophersimprint -- Typesetting articles for "Philosophers' Imprint".
 pkuthss -- LaTeX template for dissertations in Peking University.
 powerdot-FUBerlin -- Powerdot, using the style of FU Berlin.
 pracjourn -- Typeset articles for PracTeX.
 procIAGssymp -- Macros for IAG symposium papers.
 proposal -- A class for preparing proposals.
 ptptex -- Macros for 'Progress of Theoretical Physics'.
 psu-thesis -- Package for writing a thesis at Penn State University.
 resphilosophica -- Typeset articles for the journal Res Philosophica.
 resumecls -- Typeset a resumee in both Chinese and English.
 revtex -- Styles for various Physics Journals.
 revtex4 --
 ryethesis -- Class for Ryerson Unversity Graduate School requirements.
 sageep -- Format papers for the annual meeting of EEGS.
 sapthesis -- Typeset theses for Sapienza-University, Rome.
 scrjrnl -- Typeset diaries or journals.
 seuthesis -- LaTeX template for theses at Southeastern University.
 soton -- University of Southampton-compliant slides.
 spie -- Support for formatting SPIE Proceedings manuscripts.
 stellenbosch -- Stellenbosch thesis bundle.
 suftesi -- A document class for typesetting theses, books and articles.
 sugconf -- SAS(R) user group conference proceedings document class.
 tabriz-thesis -- A template for the University of Tabriz.
 texilikechaps -- Format chapters with a texi-like format.
 texilikecover -- A cover-page package, like TeXinfo.
 thesis-titlepage-fhac -- Little style to create a standard titlepage for
  diploma thesis
 thuthesis -- Thesis template for Tsinghua University.
 toptesi -- Bundle of files for typsetting theses.
 tugboat -- LaTeX macros for TUGboat articles.
 tugboat-plain --
 tui -- Thesis style for the University of the Andes, Colombia.
 uaclasses -- University of Arizona thesis and dissertation format.
 uadocs -- Course texts and masters theses in University of Antwerp style.
 uafthesis -- Document class for theses at University of Alaska Fairbanks.
 ucdavisthesis -- A thesis/dissertation class for University of California
  Davis.
 ucthesis -- University of California thesis format.
 uestcthesis -- Thesis class for UESTC
 uiucredborder -- Class for UIUC thesis red-bordered forms.
 uiucthesis -- UIUC thesis class.
 ulthese -- Thesis class and templates for Universite Laval.
 umthesis -- Dissertations at the University of Michigan.
 umich-thesis -- University of Michigan Thesis LaTeX class.
 unamthesis -- Style for Universidad Nacional Autonoma de Mexico theses.
 unswcover -- Typeset a dissertation cover page following UNSW guidelines.
 ut-thesis -- University of Toronto thesis style.
 uothesis -- Class for dissertations and theses at the University of Oregon.
 uowthesis -- Document class for dissertations at the University of
  Wollongong.
 uspatent -- U.S. Patent Application Tools for LaTeX and LyX.
 uwthesis -- University of Washington thesis class.
 vancouver -- Bibliographic style file for Biomedical Journals.
 xcookybooky -- Typeset (potentially long) recipes.
 york-thesis -- A thesis class file for York University, Toronto.

This package includes the following CTAN packages:

 SIstyle -- Package to typeset SI units, numbers and angles.
 SIunits -- International System of Units.
 alg -- LaTeX environments for typesetting algorithms.
 algorithm2e -- Floating algorithm environment with algorithmic keywords.
 algorithmicx -- The algorithmic style you always wanted.
 algorithms -- A suite of tools for typesetting algorithms in pseudo-code.
 biocon -- Typesetting biological species names
 bohr -- Simple atom representation according to the Bohr model.
 bpchem -- Typeset chemical names, formulae, etc.
 bytefield -- Create illustrations for network protocol specifications.
 chemarrow -- Arrows for use in chemistry.
 chemcompounds -- Simple consecutive numbering of chemical compounds.
 chemcono -- Support for compound numbers in chemistry documents.
 chemexec -- Creating (chemical) exercise sheets.
 chemmacros -- A collection of macros to support typesetting chemistry
  documents.
 chemnum -- A method of numbering chemical compounds.
 chemstyle -- Writing chemistry with style.
 clrscode -- Typesets pseudocode as in Introduction to Algorithms.
 complexity -- Computational complexity class names.
 computational-complexity -- Class for the journal Computational Complexity.
 digiconfigs -- Writing "configurations"
 drawstack -- Draw execution stacks.
 dyntree -- Construct Dynkin tree diagrams.
 eltex -- Simple circuit diagrams in LaTeX picture mode.
 endiagram -- Easy creation of potential energy curve diagrams.
 engtlc -- Support for users in Telecommunications Engineering.
 fouridx -- Left sub- and superscripts in maths mode.
 functan -- Macros for functional analysis and PDE theory
 galois -- Typeset Galois connections.
 gastex -- Graphs and Automata Simplified in TeX.
 gene-logic -- Typeset logic formulae, etc.
 gu -- Typeset crystallographic group-subgroup-schemes.
 hep -- A "convenience wrapper" for High Energy Physics packages.
 hepnames -- Pre-defined high energy particle names.
 hepparticles -- Macros for typesetting high energy physics particle names.
 hepthesis -- A class for academic reports, especially PhD theses.
 hepunits -- A set of units useful in high energy physics applications.
 karnaugh -- Typeset Karnaugh-Veitch-maps.
 mhchem -- Typeset chemical formulae/equations and Risk and Safety phrases.
 miller -- Typeset miller indices.
 mychemistry -- Create reaction schemes with LaTeX and ChemFig.
 nuc -- Notation for nuclear isotopes.
 objectz -- Macros for typesetting Object Z.
 physics -- Macros supporting the Mathematics of Physics.
 physymb -- Assorted macros for Physicists.
 pseudocode -- LaTeX environment for specifying algorithms in a natural way.
 sasnrdisplay -- Typeset SAS or R code or output.
 sciposter -- Make posters of ISO A3 size and larger.
 sfg -- Draw signal flow graphs.
 siunitx -- A comprehensive (SI) units package.
 steinmetz -- Print Steinmetz notation.
 struktex -- Draw Nassi-Schneidermann charts
 substances -- A database of chemicals.
 t-angles -- Draw tangles, trees, Hopf algebra operations and other
  pictures.
 textopo -- Annotated membrane protein topology plots.
 ulqda -- Support of Qualitative Data Analysis.
 unitsdef -- Typesetting units in LaTeX.
 youngtab -- Typeset Young-Tableaux.

GNU TeXmacs is a free scientific text editor, which was both inspired by TeX and GNU Emacs.

The editor allows you to write structured documents via a WYSIWYG (what-you-see-is-what-you-get) and a user friendly interface. New styles may be created by the user. The program implements high-quality typesetting algorithms and TeX fonts, which help you to produce professionally looking documents.

The high typesetting quality still goes through for automatically generated formulas, which makes TeXmacs suitable as an interface for computer algebra systems. TeXmacs also supports the Guile/Scheme extension language, so that you may customize the interface and write your own extensions to the editor.

This package contains the architecture dependent files.

This package contains a reasonably complete set of Type 1 fonts for basic use of the mathematical text editor TeXmacs. Type 1 fonts may yield better printing results and are preferred by publishers.

TeXmacs also uses Type 1 fonts from the TeTeX distribution, but without a more complete set of Type 1 fonts, TeXmacs falls back to the Metafont system and needs to autogenerate fonts from a LaTeX distribution on demand, which takes a lot of time during editing.

This package brings the pregenerated Type 1 fonts that are part of the distribution of TeXmacs for Microsoft Windows and can't be found in other Debian packages.

 Homepage: [http://www.texmacs.org/](http://www.texmacs.org/)

This package contains utilities (mainly fig2dev) to handle XFig (Facility for Interactive Generation of figures) files.

It can convert them to box, cgm, epic, eepic, eepicemu, emf, eps, gif, ibmgl, jpeg, latex, map (HTML image map), mf (MetaFont), mp (MetaPost), mmp (Multi-Meta-Post), pcx, pdf, pdftex, pdftex_t, pic, pictex, png, ppm, ps, pstex, pstex_t, ptk (Perl/tk), sld (AutoCad slide format), textyl, tiff, tk (Tcl/Tk), tpic, xbm and xpm.

XFig is a menu-driven tool that allows the user to draw and manipulate objects interactively in an X window. The resulting pictures can be saved, printed on postscript printers, or converted to a variety of other formats (e.g. to allow inclusion in LaTeX documents or web pages) using the transfig program.

This package contains the xfig program itself.

You should think about installing the transfig package to export the graphics to several common formats. You should also think about installing xfig-doc, which contains the documentation and xfig-libs, which contains several clip art libraries.

csv2latex is a simple command-line file converter that converts a comma-separated-values file into a LaTeX table. It can guess exotic csv formats.

GtkMathView is a C++ rendering engine for MathML documents. It provides an interactive view that can be used for browsing and editing MathML markup.

GtkMathView reads MathML documents by means of a frontend whose purpose is to traverse the MathML document (or part of it) and to appropriately instantiate GtkMathView's internal data structures that are suitable for rendering it. Currently the following frontends are supported: libxml2 (tree view using libxml2 API), libxml2 reader (event view using libxml2 reader API), GMetaDOM (tree view using DOM API), custom (application-specific view with application-provided callbacks).

GtkMathView renders MathML documents through a backend whose purpose is to provide an interface between the portable rendering engine and the platform-specific capabilities (like retrieving fonts, drawing on the screen, and so on). Currently the following backends are provided: GTK+, GTK+ widget, PostScript, SVG, AbiWord.

This package includes utilities to view and render MathML documents.

This is a transitional package, replacing the OpenOffice.org packaging with the LibreOffice packaging.

It can be safely removed after an upgrade.

This R package provides functions returning, displaying or writing to disk the LaTeX or HTML code associated with the supplied object of class xtable. The package also provides functions converting an R object to an xtable object, which can then be printed as a LaTeX or HTML table.

Tellico is a collection manager for KDE. It includes default collections for books, bibliographies, comic books, videos, music, coins, stamps, trading cards, and wines.

Tellico capabilities include:

• creation of user-defined custom collections with unlimited fields,
• automatically formatted names,
• sorting and filtering by any field or property,
• ISBN validation,
• full customization for printing or display through XSLT files,
• import and export of CSV, RIS, BibTeX and BibTeXML files,
• import data from Amazon, IMDb, CDDB or any US-MARC compliant z39.50 server.

Tellico files are stored in XML format, avoiding the need for a database server, and allowing other software applications to use the data.

Texmaker is a clean, highly configurable LaTeX editor with good hot key support and extensive LaTeX documentation. Texmaker integrates many tools needed to develop documents with LaTeX, in just one application. It has some nice features such as syntax highlighting, insertion of 370 mathematical symbols with only one click, and "structure view" of the document for easier navigation.

pymarc is a Python library for working with MARC21 bibliographic data loosely based on the MARC/Perl suite of modules (http://marcpm.sf.net).

Quaneko is a tool that allows you to quickly search for keywords in the files and directories on the local hard disk. It creates indexes over the words in those files. For you, this means that a typical search query will only take seconds.

quaneko can not only search for words in plain text files but also in various other file formats, depending on its configuration (e.g. Word doc, pdf, html, xml,...)

Digital library manager. Think of it as an iTunes for your PDFs.

Zotero is an easy-to-use yet powerful research tool that helps you gather, organize, and analyze sources (citations, full texts, web pages, images, and other objects), and lets you share the results of your research in a variety of ways. An extension to the popular open-source web browser Firefox, Zotero includes the best parts of older reference manager software (like EndNote)—the ability to store author, title, and publication fields and to export that information as formatted references—and the best parts of modern software and web applications (like iTunes and del.icio.us), such as the ability to interact, tag, and search in advanced ways. Zotero integrates tightly with online resources; it can sense when users are viewing a book, article, or other object on the web, and—on many major research and library sites—find and automatically save the full reference information for the item in the correct fields. Since it lives in the web browser, it can effortlessly transmit information to, and receive information from, other web services and applications; since it runs on one’s personal computer, it can also communicate with software running there (such as Microsoft Word). And it can be used offline as well (e.g., on a plane, in an archive without WiFi).

• Automatic capture of citation information from web pages
• Storage of PDFs, files, images, links, and whole web pages
• Flexible notetaking with autosave
• Fast, as-you-type search through your materials
• Playlist-like library organization, including saved searches (smart collections) and tags
• Platform for new forms of digital research that can be extended with other web tools and services
• Formatted citation export (over 1100 styles and growing)
• Integration with Microsoft Word and OpenOffice
• Saves records and notes in several languages
• Integration with WordPress and other blogging software
• Remote library backup
• Advanced search and data mining tools
• Wide variety of import/export