Debian Science Project
Zusammenfassung
Statistics
»Debian Science« Statistik-Pakete

Dieses Metapaket ist Teil des Debian Pure Blend »Debian Science« und installiert Pakete im Zusammenhang zum Begriff Statistiken. Dieser Task ist ein allgemeiner Task, welcher nützlich ist für alle wissenschaftlichen Arbeiten. Das Paket hängt von einer Reihe von R-Paketen ab, genau so wie von anderen Werkzeugen, die nützlich für die Anwendung von Statistik sind. Des weiteren ist der Task Mathematik-Wissenschaften empfohlen, um optionale Mathematik-Software zu installieren.

Die Liste auf der rechten Seite enthält verschiedene Softwareprojekte, die für das Debian Science Projekt von Interesse sind. Derzeit sind nur einige von diesen als Debianpakete verfügbar. Zielsetzung ist es jedoch, all die Software für Debian Science zu paketieren, um einen qualitativ hochwertiges Debian Pure Blend (interne Anpassung von Debian an spezielle Bedürfnisse) zu erstellen.

Um einen besseren Überblick über die Verfügbarkeit der Projekte als Debian Paket zu geben, hat jede Kopfzeile einen Farbcode entsprechend diesem Schema:

Wenn Sie ein Projekt entdecken, das ein guter Kandidat für Debian Science zu sein scheint, oder wenn Sie ein inoffizielles Debianpaket erstellt haben, zögern Sie bitte nicht eine Beschreibung des Projekts an die Debian Science Mailingliste zu schicken.

Links zu Aufgaben

Debian Science Statistics packages

Offizielle Debianpakete mit hoher Relevanz

Ess
Emacs mode for statistical programming and data analysis
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ESS ("Emacs Speaks Statistics") is a GNU Emacs and XEmacs mode for interactive statistical programming and data analysis. Languages supported are the S family (S 3/4, S-PLUS 3/4/5/6/7, and R), SAS, XLispStat, Stata, BUGS and Julia.

ESS grew out of the desire for bug fixes and extensions to S-mode and SAS-mode as well as a consistent union of their features in one package.

Littler
Kommandozeilen- und Skripting-Frontends für GNU R
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Das Programm »r« (auch bekannt als »littler«) ist ein kleiner, binärer Wrapper für die GNU-R-Sprache und -Umgebung für statistische Berechnungen und Grafiken.

Während GNU R im Batchmodus genutzt werden kann, bietet »r« volle Unterstützung sowohl für das Skripting im »shebang«-Stil (das heißt in der ersten Zeile des Skripts steht ein Ausdruck Rautenzeichen-Ausrufezeichen-Pfad) als auch für die Nutzung der Kommandozeile in Verbindung mit Pipelines. Kurz, r stellt die R-Sprache ohne die Umgebung zur Verfügung.

Psignifit
Anpassung und Test von Hypothesen über psychometrische Funktionen
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Psignifit ermöglicht die Anpassung psychometrischer Funktionen an Datensätze und erhält dabei gleichzeitig die volle Kontrolle über eine große Anzahl von Parametern. Die Daten können entweder aus Textdateien gelesen oder durch eine Pipeline übergeben werden.

Psignifit berechnet Konfidenzintervalle und testet die Güte der Anpassung.

Dies ist die Kommandozeilenversion.

Python-openturns
Python-Frontend für OpenTURNS (auch bekannt als TUI)
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OpenTURNS ist ein leistungsfähiges und generisches Werkzeug zur Behandlung und Quantifizierung von Unsicherheiten numerischer Simulationen in Planung, Optimierung und Steuerung. Es ermöglicht Untersuchungen sowohl zu Empfindlichkeiten und als auch zur Zuverlässigkeit

  • Definition der interessierenden Ausgaben und Entscheidungskriterien;
  • Quantifizierung und Modellierung der Unsicherheitsquellen;
  • Fortpflanzung von Unsicherheiten und/oder Empfindlichkeitsanalysen und
  • Rangfolge der Unsicherheitsquellen

OpenTURNS ist ein großes Projekt mit mehr als 300 C++-Klassen. Es nutzt bekannte und unterstützte Software wie R für die statistischen Methoden und BLAS/LAPACK für die lineare Algebra.

Dieses Paket enthält eine textorientierte Benutzerschnittstelle, die den Zugriff auf alle Funktionen der OpenTURNS-Bibliothek zur Verfügung stellt.

Python-scipy
wissenschaftliche Werkzeuge für Python
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SciPy ergänzt die populären NumPy-Module (das Paket python-numpy), indem eine Vielfalt von hochentwickelten Wissenschafts- und Technikmodulen zusammen in einem Paket geliefert werden.

SciPy ist ein Satz von quelloffenen wissenschaftlichen und numerischen Werkzeugen für Python. Es unterstützt derzeit spezielle Funktionen, Integrale, Gradientenoptimierung und genetische Algorithmen. Enthalten sind Werkzeuge für Parallelrechner, ein Gleichungslöser für gewöhnliche Differentialgleichungen (ODE), ein Programm, das Ausdrücke in C++-Code umsetzt und anderes mehr.

Python-stats
A collection of statistical functions for Python
Betreuer: Matthias Klose
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Python-stats provides a collection of statistical functions for Python. These functions can be applied to Python lists, Python tuples, and Numeric arrays. Most common statistical functions such as mean, standard deviation, median, mode, skewness, kurtosis, etc., are provided, along with functions for statistical hypothesis testing, analysis of variance, and for computing probability distribution functions.

Python-statsmodels
Python module for the estimation of statistical models
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statsmodels Python module provides classes and functions for the estimation of several categories of statistical models. These currently include linear regression models, OLS, GLS, WLS and GLS with AR(p) errors, generalized linear models for six distribution families and M-estimators for robust linear models. An extensive list of result statistics are available for each estimation problem.

R-cran-abind
GNU R: multidimensionale Array-Kombinationsfunktion abind
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Dieses Paket liefert die Funktion abind, eine Verallgemeinerung der Funktionen cbind und rbind des R-Basispakets. Die Funktion abind nimmt eine Sequenz an Vektoren, Matrizen oder Arrays an und erstellt daraus ein einziges Array der selben oder einer höheren Dimension.

R-cran-amore
GNU R: A MORE flexible neural network package
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This package was born to release the TAO robust neural network algorithm to the R users. It has grown and can be of interest for the users wanting to implement their own training algorithms as well as for those others whose needs lye only in the "user space".

R-cran-bayesm
GNU-R-Paket für Bayessche Statistik
Betreuer: Chris Lawrence
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Das Paket bayesm behandelt viele wichtige Modelle von Anwendungen in Marketing und Mikroökonometrie. Das Paket enthält:

  • Bayes-Regression (uni- oder multivariate dep var)
  • Multinomiales Logit- (MNL) und Multinomiales Probit-Modell (MNP)
  • Multivariates Probit-Modell,
  • Multivariate normale Mischverteilung
  • Mehrebenenanalyse mit normaler A-priori-Wahrscheinlichkeit und Kovariaten
  • »Hierarchical Multinomial Logits« mit Mischverteilungen von normalen Anfangswahrscheinlichkeit und Kovariaten
  • Bayessche Analyse von Daten einer entscheidungsbasierten Conjoint-Analyse
  • Bayessche Aufbereitung von linearen Instrumentvariablen-Modelle
  • Analyse von multivariaten Ordinal-Befragungsdaten mit in Skalen verwendete Heterogenität (siehe Rossi et al, JASA (01)).

Weiterführende Literatur: »Bayesian Statistics and Marketing« von Allenby, McCulloch und Rossi.

R-cran-boot
GNU R-Paket für bootstrapping-Funktionen von Davison und Hinkley
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Dieses Paket beinhaltet Funktionen und Datensätze aus dem Buch »Bootstrap Methods and Their Applications« von A. C. Davison und D. V. Hinkley (1997, CUP). Das Paket wurde ursprünglich von Angelo Canty geschrieben und von Brian Ripley auf R portiert.

Dieses Paket ist Teil der empfohlenen (»recommended«) Pakete von R Core und wird mit dem Originalquellcode-Release von R mitgeliefert.

URL: http://statwww.epfl.ch/davison/BMA/library.html

R-cran-cairodevice
GNU R Cairo/Gtk2 device driver package
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This CRAN package provides a Cairo/GTK2 graphics device for GNU R that that, in addition to standalone functionality, can be used to create devices as embedded components in a GUI using a Gtk drawing area widget, e.g. using RGtk2.

R-cran-car
GNU R Companion to Applied Regression by John Fox
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This package accompanies J. Fox, An R and S-PLUS Companion to Applied Regression, Sage, 2002. The package contains mostly functions for applied regression, linear models, and generalized linear models, with an emphasis on regression diagnostics, particularly graphical diagnostic methods. There are also some utility functions.

R-cran-chron
GNU R package for chronologically ordered objects
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This package contains function for chronologically ordered objects to handle dates and time in GNU R.

R-cran-cluster
GNU-R-Paket zur Cluster-Analyse von Rousseeuw et al
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Dieses Paket enthält Funktionen und Datensätze zur Cluster-Analyse, die ursprünglich von Peter Rousseeuw, Anja Struyf und Mia Hubert geschrieben wurden.

Dieses Paket ist Teil des Satzes der Pakete, die von »R Core« empfohlen werden und wird mit Original-Quellcode-Releases von R ausgeliefert.

R-cran-coda
Ausgabeanalyse und -diagnostiken für MCMC-Simulationen in R
Betreuer: Chris Lawrence
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Dieses Paket bietet Ausgabeanalyse und -diagnostiken für Markov-Ketten und Monte-Carlo-Simulationen und -Schätzungen innerhalb von R. Es beinhaltet außerdem ein paar grafische Analyseroutinen und die Möglichkeit, die Ausgabe von BUGS (Bayes Using Gibbs Sampling), einem beliebten Werkzeug für MCMC-Simulationen, zu importieren.

Das verwandte Paket r-cran-mcmcpack beinhaltet MCMC-Schätzer für ein paar geläufige Modelle der Sozialwisenschaften.

R-cran-codetools
GNU-R-Paket mit Werkzeugen zur Code-Analyse
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Dieses Paket bietet Funktionen für die Analyse von R-Code.

Dieses Paket ist Teil des Satzes der Pakete, die von »R Core« empfohlen werden und wird mit Original-Quellcode-Releases von R verteilt.

R-cran-date
GNU R package for date handling
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This CRAN package provides functions for handling dates, along with examples and documentation.

Note that this is a legacy package providing functionality that had been absent from R. However, more recent versions of R have more powerful date and datetime functionality in the base package, i.e. r-base-core under Debian.

R-cran-dbi
GNU-R-Paket, stellt eine allgemeine Datenbankschnittstelle bereit
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Dieses Paket definiert eine allgemeine Datenbankschnittstelle (DBI) zur Kommunikation zwischen R und relationalen Datenbankmanagementsystemen - vergleichbar mit Perls DBI-System. Alle in diesem Paket enthaltenen Klassen sind virtuell und müssen von den verschiedenen R/DBMS-Implementierungen erweitert werden, wie etwa durch RMySQL.

R-cran-eco
GNU R routines for Bayesian ecological inference
Betreuer: Chris Lawrence
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This is a set of routines for GNU R that implement Imai and Lu's parametric and nonparametric Bayesian ecological inference algorithms using Markov chain Monte Carlo estimation. Ecological inference is a statistical technique designed to recover individual-level information from aggregate-level data.

The suggested r-cran-mcmcpack package includes other EI estimators that may be useful alternatives to those included in this package.

R-cran-effects
GNU R graphical and tabular effects display for glm models
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This package provides functions for 'effect' displays: Graphical and tabular effect displays, e.g., of interactions, for linear generalized linear, multinomial-logit, and proportional-odds logit models.

An earlier version was described in the article by Fox (2003) in the Journal of Statistical Software available at http://www.jstatsoft.org/v08/i15/

R-cran-fbasics
GNU R package for financial engineering -- fBasics
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This package of functions for financial engineering and computational finance is part of Rmetrics, a collection of packages written and compiled by Diethelm Wuertz.

fBasics provides basic statistical tests, distributions and other tools used by many of the Rmetrics packages.

R-cran-fcopulae
GNU R package for financial engineering -- fCopulae
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This package of functions for financial engineering and computational finance is part of Rmetrics, a collection of packages written and compiled by Diethelm Wuertz.

fCopulae provides functions for (nonlinear) dependence structure modelling.

R-cran-fecofin
GNU R package for financial engineering -- fEcofin
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This package of data sets for financial engineering and computational finance is part of Rmetrics, a collection of packages written and compiled by Diethelm Wuertz.

fEcofin provides economic and financial time series and data sets.

R-cran-fextremes
GNU R package for financial engineering -- fExtremes
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This package of functions for financial engineering and computational finance is part of Rmetrics, a collection of packages written and compiled by Diethelm Wuertz.

fExtremes provides functions to analyze extreme values.

R-cran-fmultivar
GNU R package for financial engineering -- fMultivar
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This package of functions for financial engineering and computational finance is part of Rmetrics, a collection of packages written and compiled by Diethelm Wuertz.

fMultivar provides multivariate analysis for financial time series.

R-cran-foptions
GNU R package for financial engineering -- fOptions
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This package of functions for financial engineering and computational finance is part of Rmetrics, a collection of packages written and compiled by Diethelm Wuertz.

fOptions provides functions to price and hedge plain and exotic options on one or several assets.

R-cran-foreign
GNU-R-Paket zum Lesen/Schreiben von anderen Statistiksystemen
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Dieses Paket bietet Funktionen für das Lesen und Schreiben von Daten, die von anderen Statistikpaketen wie Minitab, S, SAS, SPSS, Stata, … gespeichert wurden.

Dieses Paket ist Teil des Satzes der Pakete, die von »R Core« empfohlen werden und wird mit Original-Quellcode-Releases von R verteilt.

R-cran-fportfolio
GNU-R-Paket für »Financial Engineering« -- fPortfolio
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Dieses Paket mit Funktionen zum »Financial Engineering« und zur Finanzinformatik ist ein Teil von Rmetrics, einer Sammlung von Paketen, die von Diethelm Würtz geschrieben und zusammengetragen wurde.

FPortfolio bietet Funktionen für die Modellierung des Wertes von Depots und Anlagegegenständen, Inanspruchnahme-Statistiken, Wert im Risiko (Value at Risk, VaR) und Markowitz-Portfolio-Konstruktion.

R-cran-gdata
GNU R package with data manipulation tools by Greg Warnes et al
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This package of R programming tools was written by Gregory Warnes with code contributions by Ben Bolker and Thomas Lumley.

This package used to be part of the gregmisc bundle packaged for Debian as r-cran-gregmisc.

R-cran-gmodels
GNU R package with tools for model fitting by Greg Warnes et al
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This package of R programming tools for model fitting was written by Gregory Warnes with code contributions by Ben Bolker and Thomas Lumley.

This package used to be part of the gregmisc bundle packaged for Debian as r-cran-gregmisc.

R-cran-gplots
GNU R package with tools for plotting data by Greg Warnes et al
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This package of R programming tools for plotting data was written by Gregory Warnes with code contributions by Ben Bolker and Thomas Lumley.

This package used to be part of the gregmisc bundle packaged for Debian as r-cran-gregmisc.

R-cran-gregmisc
GNU R package with miscellaneous functions by Greg Warnes et al
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This package of miscellaneous functions for GNU R that written by Gregory Warnes with code contributions by Ben Bolker, Bendix Carstensen, Don MacQueen, William Venables, Marc Schwartz, Ben Bolker, Ian Wilson, Kjetil Halvorsen, Arni Magnusson, Lodewijk Bonebakker, and others.

Most of the function in the gregmisc library fall into six general areas: permutations and combinations, tools for linear models, plots, data manipulation, and fixed or extended versions of existing functions.

Note that as of version 2.0.8, gregmisc's code is now provided by the new packages gdata, gmodels, gplots and gtools which contain all the code formerly provided by gregmisc. Unless any of your R code still loads the gregmisc package directly, and you thus need it to load the component packages, you can remove this package.

R-cran-gtools
GNU R package with R programming tools by Greg Warnes et al
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This package of R programming tools was written by Gregory Warnes with code contributions by Ben Bolker and Thomas Lumley.

This package used to be part of the gregmisc bundle packaged for Debian as r-cran-gregmisc.

R-cran-hdf5
GNU R package interfacing the NCSA HDF5 library
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This package provides the functions hdf5save and hdf5load which allow saving and loading of R variables in the Hierarchical Data Format (HDF) format. Lists, strings, vectors, matrices and higher-dimensional arrays are supported.

R-cran-hmisc
Verschiedene Funktionen für GNU R von Frank Harrell
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Die Hmisc Bibliothek beinhaltet viele Funktionen die nützlich sind für Datenanalyse, High-Level Grafiken, Werkzeug Operationen, Funktionen zum Berechnen von Grössen und Potenzen, Übersetzen von SAS Datensätzen, Ermittluing fehlender Werte, erweiterte Tabellenerstellung, Variablenclusterung, Manipulation von Zeichenketten, Konvertierung von S Objekten in LaTeX Code, Aufzeichnung von Variablen und Grundlagen für wiederholte Messdatenanalyse.

R-cran-its
GNU R package for handling irregular time series
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This package contains an S4 class for handling irregular time series

R-cran-kernsmooth
GNU R package for kernel smoothing and density estimation
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This package provides functions for kernel smoothing and density estimation corresponding to M.P. Wand and M.C. Jones, "Kernel Smoothing", 1995.

This package is part of the set of packages that are 'recommended' by R Core and shipped with upstream source releases of R itself.

URL: http://www.maths.unsw.edu.au/~wand

R-cran-lattice
GNU-R-Paket für »Trellis«-Grafiken
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Dieses Paket stellt Funktionen für »Trellis«-Grafiken bereit. »Trellis« ist ein Framework für Datenvisualisierung und wurde an den Bell Labs von Rick Becker, Bill Cleveland et al. entwickelt, indem Ideen aus dem Buch »Visualizing Data« von Bill Cleveland aus dem Jahr 1993 ausgebaut wurden.

Dieses Paket ist Teil des Satzes der Pakete, die von »R Core« empfohlen werden und wird mit Original-Quellcode-Releases von R ausgeliefert.

R-cran-latticeextra
GNU R package of additional graphical displays based on lattice
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This CRAN package provides generic functions and standard methods for trellis-based displays.

R-cran-lme4
GNU R package for linear mixed effects model fitting
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This CRAN package provides S4 classes and methods for fitting and examining linear mixed effects models (also called multilevel models, panel data models, and several other names) and generalized linear mixed effects models.

R-cran-lmtest
GNU R package for diagnostic checking in linear models
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This package provides a collection of tests, data sets and examples for diagnostic checking in linear regression models.

R-cran-mapdata
GNU R support for producing geographic maps (supplemental data)
Betreuer: Chris Lawrence
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This package provides facilities for easily producing high-resolution maps based on data sets in the GNU R statistical computing environment. It includes high-resolution map data for the entire world, along with maps of China (including provincial boundaries) and a higher-resolution map of New Zealand and a number of nearby Pacific islands.

The suggested r-cran-mapproj package adds facilities for calculating geographic projections, which are used by mapmakers to compensate for the inaccuracies inherent in projecting a spheroid's surface onto a two-dimensional plane.

R-cran-mapproj
GNU-R-Unterstützung für Kartennetzentwürfe von Kartendaten
Betreuer: Chris Lawrence
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Dieses Paket bietet Möglichkeiten, um einfach Kartennetzentwürfe von Kartendaten basierend auf Datensätzen in der statistischen Berechnungsumgebung GNU R zu erstellen. Netzentwürfe werden von Kartenherstellern verwendet, um die Ungenauigkeiten auszugleichen, die beim Projizieren einer sphärischen Oberfläche auf eine zweidimensionale Ebene unausweichlich entstehen.

R-cran-maps
GNU R support for producing geographic maps
Betreuer: Chris Lawrence
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This package provides facilities for easily producing maps based on data sets in the GNU R statistical computing environment.

The r-cran-maps package includes map data for the United States (including state and county-level maps), New Zealand, and a world map; additional maps (including a higher-resolution world map) are available in the suggested r-cran-mapdata package.

The suggested r-cran-mapproj package adds facilities for calculating geographic projections, which are used by mapmakers to compensate for the inaccuracies inherent in projecting a spheroid's surface onto a two-dimensional plane.

R-cran-matchit
GNU R package of nonparametric matching methods
Betreuer: Chris Lawrence
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MatchIt implements the suggestions of Ho, Imai, King, and Stuart (2004) for improving parametric statistical models by preprocessing data with nonparametric matching methods.

MatchIt implements a wide range of sophisticated matching methods, making it possible to greatly reduce the dependence of causal inferences on hard-to-justify, but commonly made, statistical modeling assumptions. The software also easily fits into existing research practices since, after preprocessing with MatchIt, researchers can use whatever parametric model they would have used without MatchIt, but produce inferences with substantially more robustness and less sensitivity to modeling assumptions. MatchIt is an R program, and also works seamlessly within Zelig.

R-cran-matrix
GNU R - Paket von Klassen für dicht und dünn besetzte Matrizen
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Dieses CRAN-Paket bietet S4 Klassen und Methoden für numerische lineare Algebra mit dicht oder dünn besetzten Matrizen. Die Implementierung für dünn besetzte Matrizen verwendet Code aus den Paketen »LDL sparse matrix« und »metis«, einem Paket mit Partitionierungs-Algorithmen.

R-cran-mcmcpack
R routines for Markov chain Monte Carlo model estimation
Betreuer: Chris Lawrence
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This is a set of routines for GNU R that implement various statistical and econometric models using Markov chain Monte Carlo (MCMC) estimation, which allows "solving" models that would otherwise be intractable with traditional techniques, particularly problems in Bayesian statistics (where one or more "priors" are used as part of the estimation procedure, instead of an assumption of ignorance about the "true" point estimates), although MCMC can also be used to solve frequentist statistical problems with uninformative priors. MCMC techniques are also preferable over direct estimation in the presence of missing data.

Currently implemented are a number of ecological inference (EI) routines (for estimating individual-level attributes or behavior from aggregate data, such as electoral returns or census results), as well as models for traditional linear panel and cross-sectional data, some visualization routines for EI diagnostics, two item-response theory (or ideal-point estimation) models, metric, ordinal, and mixed-response factor analysis, and models for Gaussian (linear) and Poisson regression, logistic regression (or logit), and binary and ordinal-response probit models.

The suggested packages (r-cran-bayesm, -eco, and -mnp) contain additional models that may also be useful for those interested in this package.

The package is enhanced by the following packages: r-cran-mnp
R-cran-mgcv
»GNU R«-Paket für Multiple-Glättungsparameter-Schätzung
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Dieses Paket stellt Funktionen für verallgemeinerte additive Modelle (GAMs, d.h. Generalized Additive Models) und andere verallgemeinerte Probleme der Ridge-Regression bereit, bei denen die Auswahl der multiplen Glättungsparameter durch GCV oder UGRE erfolgt. Es enthält eine Implementierung (keinen Klon) von gam().

Dieses Paket ist Teil des Satzes der Pakete, die von »R Core« empfohlen werden und wird mit Original-Quellcode-Releases von R ausgeliefert.

R-cran-misc3d
GNU R collection of 3d plot functions and rgl-based isosurfaces
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This CRAN package provides a collection of miscellaneous 3d plots, including rgl-based isosurfaces:

 contour3d     Uses rgl to render isosurfaces, or three-dimensional
               contours, computed by the marching cubes algorithm.
 image3d       Crude 3d analog of image() using rgl to plot points on a
               three dimensional grid representing values in a three
               dimensional array. Assumes high values are inside and
               uses alpha blending to make outside points more
               transparent.
 lines3d       Draws connected line segments in an rgl window.
 parametric3d  Plots a two-parameter surface in three dimensions in
               rgl.  Based on Mathematica's Param3D
 slices3d      Uses tkrplot to create an interactive slice view of three or
               four dimensional volume data, such as MRI data.
R-cran-mnp
GNU R package for fitting multinomial probit (MNP) models
Betreuer: Chris Lawrence
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MNP is an R package that fits Bayesian Multinomial Probit (MNP) models via Markov chain Monte Carlo (MCMC). Along with the standard multinomial probit model, it can also fit models with different choice sets for each observation and complete or partial ordering of all the available alternatives. The estimation is based on the efficient marginal data augmentation algorithm that is developed by Imai and van Dyk (2004).

R-cran-msm
»GNU R«-Modelle Multi-State Markov und Hidden Markov in kontinuierlicher Zeit
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Funktionen zur Parameterbestimmung von generellen zeitkontinuierlichen und Hidden-Markov-Multi-State-Modellen zu längslaufenden Daten. Sowohl Übergangsraten in Markov-Modellen als auch der Hidden-Markov-Ausgabeprozess können modelliert werden, innerhalb der Gesetze der Zusatzwerte (covariates). Eine Auswahl von Beobachtungsschemata wird unterstützt, inklusive Beobachtung von Prozessen zu beliebigen Zeiten, vollständig überwachte Prozesse und zensierte Stadien.

Please cite: Christopher H. Jackson: Multi-State Models for Panel Data: The msm Package for R. Journal of Statistical Software 38(8):1-29 (2011)
R-cran-multcomp
GNU R package for multiple comparison procedures
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This package provides functions to perform multiple comparison tests and simultaneous confidence intervals in one-way layout testing setups.

R-cran-mvtnorm
GNU R package to compute multivariate Normal and T distributions
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This package provides a collection of functions to compute the multivariate Normal and T distributions.

R-cran-nlme
GNU-R-Paket für (nicht-)lineare gemischte Modelle
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Dieses Paket stellt Funktionen zur Parameterbestimmung und zum Vergleich linearer und nichtlinearer gemischter Modelle bereit.

Dieses Paket ist Teil des Satzes der Pakete, die von »R Core« empfohlen werden und wird mit Original-Quellcode-Releases von R ausgeliefert.

R-cran-pscl
GNU R package for discrete data models
Betreuer: Chris Lawrence
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This package consists of R functions developed at the Political Science Computational Laboratory at Stanford University; it currently includes models for count data (hurdle regression and zero-inflated negative binomial and Poisson models), ordinal probit and logit (also available in MASS via polr), and an item-response theory model. Also included are Vuong tests for non-nested hypothesis testing and convenience functions for handling roll-call vote matrices.

R-cran-psy
GNU-R-Prozeduren für die Psychometrie
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Dieses Paket enthält etliche Prozeduren, die in der Psychometrie und bei der Skalierung angewendet werden, unter anderem:

  • Cohens Kappa und gewichtetes Kappa (Test der Übereinstimmung von Einschätzungen zweier Beurteiler)
  • Cronbachs Alpha (ein Test der Itemreliabilität)
  • Fokussierte Hauptkomponentenanalyse
  • Intra-Klassen-Korrelationskoeffizienten
  • Lights Kappa (Test der Übereinstimmung von Einschätzungen von n Beurteilern)
  • Screeplots und grafische Darstellungen von Hauptkomponenten
R-cran-qtl
GNU R package for genetic marker linkage analysis
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R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. It is implemented as an add-on-package for the freely available and widely used statistical language/software R (see http://www.r-project.org).

The development of this software as an add-on to R allows one to take advantage of the basic mathematical and statistical functions, and powerful graphics capabilities, that are provided with R. Further, the user will benefit by the seamless integration of the QTL mapping software into a general statistical analysis program. The goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing.

A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. The main HMM algorithms were implemented, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses.

The current version of R/qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation.

Please cite: Karl W. Broman, Hao Wu, Saunak Sen and Gary A. Churchill: R/qtl: QTL mapping in experimental crosses. (PubMed,eprint) Bioinformatics 19:889-890 (2003)
R-cran-quadprog
GNU R package for solving quadratic programming problems
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This CRAN package provides functions and documentation for solving quadratic programming problems in GNU R.

R-cran-rcmdr
GNU R Plattform-unabhängige, einfache Statistik Oberfläche
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Dieses Paket stellt eine einfache, auf dem GNU Tcl/Tk Interface aufbauende, Oberfläche zur Verfügung. Sie ist für eine Einführung in Statistik geeignet.

R-cran-relimp
GNU R package for inference on relative importance of regressors
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This package provides functions to facilitate inference on the relative importance of predictors in a linear or generalized linear model.

R-cran-rggobi
GNU R package for the GGobi data visualization system
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This Debian package contains the R package for access to the ggobi data visualization system for high-dimensional data from within GNU R.

See http://www.ggobi.org/rggobi for rggobi, http://www.ggobi.org/ggobi and http://www.r-project.org for GNU R.

R-cran-rgl
GNU R package for three-dimensional visualisation using OpenGL
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This package provides functions implementing a new graphics device suitable for visualisation of GNU R objects in three dimensions using the OpenGL libraries.

R-cran-rgtk2
GNU R binding for Gtk2
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This package provides facilities in the S language (i.e. the language which GNU R provides) for programming graphical interfaces using Gtk, the GNOME GUI toolkit.

This package extends and updates the previous r-omegahat-rgtk package to the 2.8 release of the Gtk libraries.

R-cran-rmpi
GNU R package interfacing MPI libraries for distributed computing
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This CRAN package provides an interface to the MPI (Message-Passing Interface) API. It also provides an interactive R slave environment in which distributed statistical computing can be carried out.

R-cran-rms
GNU R regression modeling strategies by Frank Harrell
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Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. rms is a collection of 229 functions that assist with and streamline modeling. It also contains functions for binary and ordinal logistic regression models and the Buckley-James multiple regression model for right-censored responses, and implements penalized maximum likelihood estimation for logistic and ordinary linear models. rms works with almost any regression model, but it was especially written to work with binary or ordinal logistic regression, Cox regression, accelerated failure time models, ordinary linear models, the Buckley-James model, generalized least squares for serially or spatially correlated observations, generalized linear models, and quantile regression.

See Frank Harrell (2001), Regression Modeling Strategies, Springer Series in Statistics, as well as http://biostat.mc.vanderbilt.edu/Rrms.

R-cran-rmysql
GNU R package providing a DBI-compliant interface to MySQL
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The package implements access to MySQL databases via the DBI interface of R.

R-cran-rodbc
GNU R-Paket für ODBC-Datenbankzugriff
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Dieses CRAN-Paket bietet Zugriff auf jede über »Open DataBase Connectivity« (ODBC) zugängliche Datenbank.

Das Paket ist plattformunabhängig und ermöglicht Zugriff auf jede Datenbank, für die ein Treiber existiert. Es wurde getestet mit MySQL und PostgreSQL unter Linux und Windows (und auf diese Datenbanken auf Linux-Rechnern von R unter Windows), Microsoft Access, SQL Server und Excel-Tabellen (nur lesend), und Anwender berichten über erfolgreiche Verbindungen zu Oracle und DBase.

Die Benutzung ist im »R Data Import/Export Manual« beschrieben (enthalten in den Paketen r-doc-pdf, r-doc-html und r-doc-info).

R-cran-rpart
GNU R-Paket für rekursive Partionierung und Regressionsbäume
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Dieses Paket bietet Funktionen für rekursive Partionierung und Regressionsbäume.

Dieses Paket ist Teil der empfohlenen (»recommended«) Pakete von R Core und wird mit dem Originalquellcode-Release von R mitgeliefert.

URL (vom S-Plus-Original): http://www.mayo.edu/hsr/Sfunc.html

R-cran-rpvm
GNU R package interfacing PVM libraries for distributed computing
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This CRAN package provides an interface to the PVM (Parallel Virtual Machine) API, along with documentation and examples.

R-cran-rquantlib
GNU R package interfacing the QuantLib finance library
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This CRAN package provides an interface for GNU R to the QuantLib library for modeling, trading, and risk management of financial assets.

R-cran-rserve
GNU R Rserve tcp/ip server and sample clients
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This package provide Rserve, a headless server for GNU R. Rserve acts as a socket server (TCP/IP or local sockets) which allows binary requests to be sent to R. Every connection has a separate workspace and working directory. Client-side implementations are available for popular languages such as C/C++ and Java, allowing any application to use facilities of R without the need of linking to R code. Rserve supports remote connection, user authentication and file transfer. A simple R client is included in this package as well.

URL: http://www.rosuda.org/Rserve/

R-cran-rsprng
GNU R interface to SPRNG (Scalable Parallel RNGs)
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This package provides an interface to the SPRNG (Scalable Parallel Random Number Generator) library API, along with examples and documentation.

R-cran-sandwich
GNU R package for model-robust standard error estimates
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This package contains model-robust standard error estimators for time series and longitudinal data.

R-cran-sm
GNU R package for kernel smoothing methods
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This CRAN package provides functions and documentation for kernel smoothing methods for GNU R. The functions are described in the book "Applied Smoothing Techniques for Data Analysis: The kernel approach with S-Plus illustrations" by Adrian W. Bowman & Adelchi Azzalini, Oxford UP, 1997.

R-cran-snow
GNU-R-Paket für ein »Einfaches Netzwerk von Arbeitsplatzrechnern«
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Dieses Paket enthält des »einfache Netz von Arbeitsplatzrechnern« (simple network of workstations, SNOW), ein einfach zu bedienendes System für parallele Berechnungen mit GNU R.

R-cran-strucchange
GNU R package for structural change regression estimation
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This package functions for testing, dating and monitoring of structural change in linear regression relationships. The strucchange package features tests/methods from the generalized fluctuation test framework as well as from the F test (Chow test) framework. This includes methods to fit, plot and test fluctuation processes (e.g., CUSUM, MOSUM, recursive/moving estimates) and F statistics, respectively. It is possible to monitor incoming data online using fluctuation processes.

Finally, the breakpoints in regression models with structural changes can be estimated together with confidence intervals. Emphasis is always given to methods for visualizing the data.

R-cran-survival
GNU-R-Paket für Ereigniszeitanalysen
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Dieses Paket enthält Funktionen und Datensätze für Ereigniszeitanalysen: deskriptive Statistik, Zweistichproben-Tests, parametrische AFT-Modelle (»accelerated failure time model«), Cox-Regression. »Delayed entry« (Trunkation) ist für alle Modelle erlaubt, intervall-zensierte Daten für parametrische Modelle.

Dieses Paket ist Teil des Satzes der Pakete, die von »R Core« empfohlen werden und wird mit Original-Quellcode-Releases von R ausgeliefert.

R-cran-teachingdemos
GNU R Demonstrations for teaching and learning
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This package is a set of demonstration functions that can be used in a classroom to demonstrate statistical concepts, or on your own to better understand the concepts or the programming.

R-cran-tkrplot
GNU R embedded Tk plotting device Paket
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Dieses CRAN Paket stellt ein Tk graphics device zur Verfügung welches Ihnen erlaubt GNU R plot() Ergebnisse in Tk Widgets einzubinden.

R-cran-tseries
GNU R package for time-series analysis and comp. finance
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This CRAN package provides additional time-series analysis functions, as well as several computational finance routines.

R-cran-vcd
GNU R Visualizing Categorical Data
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Visualization techniques, data sets, summary and inference procedures aimed particularly at categorical data. Special emphasis is given to highly extensible grid graphics. The package was inspired by the book "Visualizing Categorical Data" by Michael Friendly.

R-cran-vgam
GNU R package for estimating vector generalized additive models
Betreuer: Chris Lawrence
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This package implements a variety of functions for estimating vector generalized additive models (VGAMs), as well as vector generalized linear models (VGLMs), reduced-rank VGLMs, and quadratic reduced-rank VGLMs.

Specific models that can be fit include a wide variety of categorical-response models (with nominal and ordinal dependent variables), bivariate binary-response models (bivariate logit/probit), and seemingly-unrelated regressions. The package also includes a number of standard and non-standard distribution functions of use to statisticians.

R-cran-vr
GNU R package accompanying the Venables and Ripley book on S
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This package provides functions and datasets from the book by William N. Venables and Brian D. Ripley, "Modern Applied Statistics with S", 4th ed., Springer, 2002. The VR package contains four individuals packages: MASS, class, nnet and spatial.

These packages are now shipped in individual packages upon which this package depends. Once all reverse Depends: on r-cran-vr are resolved you will be able to remove the metapackage.

R-cran-xml
GNU R package for XML parsing and generation
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This package provides facilities for the R language to

  • parse XML files, URLs and strings, using either the DOM (Document Object Model)/tree-based approach, or the event-driven SAX (Simple API for XML) mechanism;
  • generate XML content to buffers, files, URLs, and internal XML trees;
  • read DTDs as R objects.
R-cran-zelig
GNU R package providing a unified front-end for estimating statistical models
Betreuer: Chris Lawrence
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With thousands of contributors who have written hundreds of packaged routines, R can deal with nearly any statistical problem. Although this high level of participation may be its greatest strength, the enormous diversity in approaches to statistical inference covered by R often results in a virtual babel of competing functions and inconsistent syntax.

To address these problems from a common perspective, the upstream authors have created Zelig, a single, easy-to-use program, with a unified framework and syntax, that can estimate, help interpret, and present the results of a large range of statistical methods. It literally is "everyone's statistical software" because Zelig uses R code from many researchers. They also hope it will become "everyone's statistical software" for applications, and they have designed it so that anyone can use it or add their methods to it. Zelig comes with detailed, self-contained documentation that minimizes startup costs for Zelig and R, automates graphics and summaries for all models, and, with only three simple commands required, generally makes the power of R accessible for all users. Zelig also works well for teaching, and is designed so that scholars can use the same program they use for their research.

The package is enhanced by the following packages: r-cran-vgam
R-cran-zoo
GNU R package for totally ordered indexed observations
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This package contains an S4 class with methods for totally ordered indexed observations such as irregular time series.

R-recommended
»GNU R«-Sammlung von empfohlenen Paketen [Metapaket]
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R ist ein System für statistische Berechnungen und Grafiken. Es besteht aus einer Sprache mit grafischer Laufzeitumgebung und einem Debugger. Der Zugriff auf bestimmte Systemfunktionen und die Ausführung von Skriptdateien ist möglich.

Der Entwurf von R wurde stark von zwei existierenden Sprachen beeinflusst: S von Becker, Chambers & Wilks und Scheme von Sussman. Während die resultierende Sprache ein S ähnelndes Aussehen hat, stammt die Semantik und die interne Implementierung von Scheme ab.

Der Kern von R ist eine interpretierte Programmiersprache, die Verzweigungen und Schleifen sowie modulare Programmierung unter Verwendung von Funktionen ermöglicht. Die meisten dem Anwender zugänglichen Funktionen von R sind in R geschrieben. Der Anwender kann zur Effizienzsteigerung in den Sprachen C, C++ oder Fortran geschriebene Funktionen einsetzen, was auch viele Grundfunktionen von R ausnutzen. Die R-Distribution enthält Funktionalitäten für eine große Zahl statistischer Verfahren und die zugrunde liegenden mathematischen Berechnungen. Es gibt auch eine Vielzahl von Funktionen, die zusammen eine flexible grafische Umgebung für die Erzeugung vielfältiger grafischer Darstellungen bilden.

Zusätzlich sind mehrere tausend Erweiterungs-»Pakete« beim Comprehensive R Archive Network (CRAN) verfügbar. Viele von ihnen sind auch als Debian-Pakete verfügbar, deren Namen dem Schema »r-cran-« folgen.

Dieses Paket ist nun ein Metapaket, welches von einem Satz von Paketen abhängt, welche vom R-Core-Entwicklerteam als Teil einer vollständigen R-Distribution empfohlen werden und zusammen mit dem Quelltext von R, genauso wie direkt über das CRAN-Spiegel-Netzwerk verteilt werden. Dieser Satz enthält die folgenden Pakete (nach ihren ursprünglichen Namen sortiert):

  • KernSmooth: Funktionen zum »kernel smoothing« nach Wand & Jones (1995)
  • Matrix: Klassen, Methoden und Funktionen für dicht- und dünnbesetzte Matrizen, unter Verwendung von Lapack und SuiteSparse
  • MASS, class, nnet und spatial: Pakete aus dem Buch »Modern Applied Statistics with S« (vierte Auflage) von Venables und Ripley,
  • boot: Bootstrap-Functionen für R (S-Plus) aus dem Buch »Bootstrap Methods and Their Applications« von A.C. Davison und D.V. Hinkley (1997).
  • cluster: Funktionen zum Clustering (von Rousseuw et al.)
  • codetools: Werkzeuge zur Codeanalyse für R
  • foreign: von Minitab, S, SAS, SPSS, Stata ... abgespeicherte Daten lesen
  • lattice: Implementierung von Trellis-Grafiken für R
  • mgcv: Multiple-Glättungsparameter-Schätzung und GAMs (verallgemeinerte adaptive Modelle) per GCV (verallgemeinerte Kreuzvalidierung)
  • nlme: Lineare und nichtlineare Gemischte-Effekte-Modelle
  • rpart: Rekursive Partitionierung und Regressionsbäume
  • survival: Survival-Analyse, einschließlich Penalized-Likelihood.
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Rkward
KDE-Frontend für die Statistiksprache R
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Rkward zielt darauf ab, eine einfach bedienbare, transparente Oberfläche für R zu werden. R ist ein leistungsfähiges System für statistische Berechnungen und Grafiken. Neben einer komfortablen grafischen Oberfläche für die wichtigsten statistischen Funktionen werden zukünftige Versionen auch die nahtlose Einpassung in eine Office-Suite bieten.

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R-cran-spc
Statistische Prozesslenkung für GNU R
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Auswertung der Regelkarten durch den Null- und Dauerzustand ARL (Average Run Length). Einstellung der Regelkarten für gegebene ARL und Plotten der relativen Abbildungen. Die betrachteten Regelkarten sind die ein- und zweiseitigen EMWA- und CUSUM-Karten zur Überwachung des Mittels der normal verteilten unabhängigen Daten. Die ARL-Berechnung der EWMA-S^2-Regelkarten wurden hinzugefügt. Andere Karten und Parameter sind in Planung. Weitere Bereiche der statistischen Prozesslenkung werden ebenfalls implementiert (Stichprobenpläne, Fähigkeitsindexe...).

Science-mathematics
Debian Science: Mathematik-Pakete
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Dieses Metapaket installiert Debian-Science-Pakete mit Bezug zur Mathematik. Vielleicht ist auch das Debtag field::mathematics und, je nach Ihrem Fokus, das Metapaket education-mathematics für Sie von Interesse.

Paketierung hat begonnen und Entwickler könnten einen Versuch mit dem Code im VCS starten

R-cran-spam
GNU R SPArse Matrix
Lizenz: non-free
Debianpaket nicht verfügbar
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Version: 0.15.4-1

Set of function for sparse matrix algebra. Differences with SparseM/Matrix are: (1) onlyone sparse matrix format is supported (essentially) , (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within GMRF. (4) S3 and S4 like-"compatible" ... and it is fast.

Inoffizielle Pakete, die nicht durch das Debian Projekt erstellt wurden

Pandas
data structures for "relational" or "labeled" data
Lizenz: BSD-3
Language: Python, Cython

pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python. pandas is well suited for many different kinds of data:

  • Tabular data with heterogeneously-typed columns, as in an SQL table or Excel spreadsheet
  • Ordered and unordered (not necessarily fixed-frequency) time series data.
  • Arbitrary matrix data (homogeneously typed or heterogeneous) with row and column labels
  • Any other form of observational / statistical data sets. The data actually need not be labeled at all to be placed into a pandas data structure
R-cran-acepack
GNU R package for regression transformations
Lizenz: unknown

This package provides the functions ace() and avas() for GNU R which can be used to select regression tranformations.

Remark of Debian Science team: Removed from Debian

This package was removed from Debian but some versions are available from http://snapshot.debian.org/

Reasons are given here: http://bugs.debian.org/554512

R-cran-fcalendar
GNU R package for financial engineering -- fCalendar
Lizenz: unknown

This package of functions for financial engineering and computational finance is part of Rmetrics, a collection of packages written and compiled by Diethelm Wuertz.

fCalendar provides basic time and date manipulations, holiday calculators and other tools. Its code was previously provided within the fBasics package from which it has been split off.

Remark of Debian Science team: Removed from Debian

This package was removed from Debian but some versions are available from http://snapshot.debian.org/

Reasons are given here: http://bugs.debian.org/554513

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