Summary
Image analysis
Debian Science image analysis packages
This metapackage will install Debian Science packages related to
scientific image acquisition. This might be used in several
sciences (as for instance science-dataacquisition, science-viewing
and science-typesetting).
The list to the right includes various software projects which are of some interest to the Debian Science Project. Currently, only a few of them are available as Debian packages. It is our goal, however, to include all software in Debian Science which can sensibly add to a high quality Debian Pure Blend.
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Science
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Science mailing list
Links to other tasks
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Debian Science Image analysis packages
Official Debian packages with high relevance
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Gpiv
GUI program for Particle Image Velocimetry
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| Versions of package gpiv |
| Release | Version | Architectures |
| sid | 0.6.1-2 | s390,alpha,amd64,armel,hppa,i386,ia64,mips,mipsel,powerpc,sparc |
| squeeze | 0.6.1-2 | sparc,powerpc,ia64,i386,hppa,s390,armel,amd64,mipsel,mips |
| lenny | 0.5.2-3 | i386,s390,hppa,amd64,mips,sparc,powerpc,alpha,mipsel,arm,ia64,armel |
| sid | 0.5.2-3 | hurd-i386 |
| etch | 0.3.1-2 | s390,mips,arm,mipsel,powerpc,amd64,sparc,hppa,alpha,i386,ia64 |
| Debtags of package gpiv: |
| uitoolkit | gtk |
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License: DFSG free
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Gpiv is a Graphic User Interface program using the GTK/GNOME libraries for
Particle Image Velocimetry (PIV). The program gives a quick overview
of the parameter settings of the processes and allows to change them
easy, running the processes, individually or in a chain,
visualizes and displays the results. The processes that may be
invoked by Gpiv are:
Image processing: typical image manipulations that might be needed for PIV
interrogation.
Image interrogation, resulting into estimators of particle image
displacements.
Data validation to test on outliers, peak-locking effect and
velocity gradients over the interrogation area's.
Data post-processing: data manipulation, spatial and time scaling to
obtain a velocity field from the PIV data, calculation of spatial
averages, vorticity and strain.
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Gpivtools
command line programs for Particle Image Velocimetry
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| Versions of package gpivtools |
| Release | Version | Architectures |
| sid | 0.6.0-1+b1 | i386,amd64,ia64,powerpc |
| squeeze | 0.6.0-1+b1 | powerpc,amd64,i386,ia64 |
| sid | 0.6.0-1 | s390,alpha,armel,hppa,mips,mipsel,sparc |
| squeeze | 0.6.0-1 | sparc,mipsel,hppa,armel,s390,mips |
| lenny | 0.5.2-3 | alpha,ia64,hppa,powerpc,mips,amd64,s390,sparc,i386,mipsel,arm,armel |
| sid | 0.5.2-3 | hurd-i386 |
| etch | 0.3.3-1 | powerpc,mips,mipsel,sparc,arm,alpha,hppa,amd64,i386,s390,ia64 |
| upstream | 0.6.0 |
| Debtags of package gpivtools: |
| interface | commandline |
| role | program |
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License: DFSG free
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A collection of programs for images that are generated
during a Particle Image Velocimetry (PIV) experiment. This is a
technique to obtain the velocity field of a fluid flow quantitatively
and is performed by tracking tracer particles that have been seeded
to a fluid. The technique is also applied for observing deformations
at surfaces of (solid) bodies. The package contains:
an image processing program for typical filtering and manipulation
routines that may be convenient for PIV.
an image interrogation program resulting into estimators of particle
image displacements.
validation programs to test on outliers, peak-locking effect and
velocity gradients.
post-processing programs for data manipulation (flipping, rotation
etc), spatial and time scaling, calculation of spatial averages and
derivative quantities from the PIV data, like vorticity and strain.
miscellaneous programs and scripts to perform image format conversion,
batch-processing, pipeline processing (image evaluation, validation and
post-processing at once), calculation of time averages from a series
of PIV data sets, data-visualization and data-manipulation.
All programs start with gpiv_.
This package contains all files used by gpivtools and gpivtools-mpi,
like the man pages.
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Gwyddion
Scanning Probe Microscopy visualization and analysis tool
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| Versions of package gwyddion |
| Release | Version | Architectures |
| sid | 2.18-2 | ia64,alpha,amd64,armel,hppa,hurd-i386,i386,mips,mipsel,powerpc,s390,sparc |
| squeeze | 2.18-2 | mipsel,hppa,amd64,powerpc,armel,ia64,sparc,mips,i386,s390 |
| lenny | 2.10-1+b1 | s390,hppa,mips,sparc |
| lenny | 2.10-1 | arm,i386,armel,mipsel,ia64,alpha,amd64,powerpc |
| Debtags of package gwyddion: |
| field | physics |
| interface | x11 |
| role | program |
| scope | application |
| uitoolkit | gtk |
| use | viewing, analysing |
| works-with | image:raster |
| x11 | application |
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License: DFSG free
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Gwyddion is a modular program for Scanning Probe Microscopy (SPM) data
visualization and analysis. It is primarily intended for analysis of height
field data obtained by microscopy techniques like
Atomic Force Microscopy (AFM),
Magnetic Force Microscopy (MFM),
Scanning Tunneling Microscopy (STM),
Near-field Scanning Optical Microscopy (SNOM or NSOM)
and others. However, it can be used for arbitrary height field and
image analysis.
This package contains the main application and its modules. It also contains
a GNOME (and Xfce) thumbnailer which creates previews for all file types known
to Gwyddion.
Gwyddion's Python scripting interface Pygwy is also included.
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Libcv1
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| Versions of package libcv1 |
| Release | Version | Architectures |
| sid | 1.0.0-6.3 | ia64,alpha,amd64,armel,hppa,i386,mips,mipsel,powerpc,s390,sparc |
| squeeze | 1.0.0-6.3 | mipsel,hppa,amd64,powerpc,armel,ia64,sparc,mips,i386,s390 |
| lenny | 1.0.0-6.1 | i386,arm,mipsel,ia64,alpha,mips,armel,amd64,s390,hppa,sparc,powerpc |
| Debtags of package libcv1: |
| role | shared-lib |
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License: DFSG free
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This package contains the OpenCV (Open Computer Vision) runtime libraries.
The Open Computer Vision Library is a collection of algorithms and sample
code for various computer vision problems. The library is compatible with
IPL (Intel's Image Processing Library) and, if available, can use IPP
(Intel's Integrated Performance Primitives) for better performance.
OpenCV provides low level portable data types and operators, and a set
of high level functionalities for video acquisition, image processing and
analysis, structural analysis, motion analysis and object tracking, object
recognition, camera calibration and 3D reconstruction.
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Libteem1
Tools to process and visualize scientific data and images - runtime
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| Versions of package libteem1 |
| Release | Version | Architectures |
| sid | 1.10.0.dfsg1-2 | mips,armel,mipsel,hurd-i386,powerpc,i386,s390,amd64,sparc,alpha,ia64,hppa |
| squeeze | 1.10.0.dfsg1-2 | sparc,amd64,armel,hppa,i386,ia64,mips,mipsel,powerpc,s390 |
| Debtags of package libteem1: |
| role | shared-lib |
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License: DFSG free
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Teem is a coordinated group of libraries for representing, processing, and
visualizing scientific raster data. Teem includes command-line tools that
permit the library functions to be quickly applied to files and streams,
without having to write any code. The most important and useful libraries in
Teem are:
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Nrrd (and the unu command-line tool on top of it) supports a range of
operations for transforming N-dimensional raster data (resample, crop,
slice, project, histogram, etc.), as well as the NRRD file format for
storing arrays and their meta-information.
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Gage: fast convolution-based measurements at arbitrary point locations in
volume datasets (scalar, vector, tensor, etc.)
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Mite: a multi-threaded ray-casting volume render with transfer functions
based on any quantity Gage can measure
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Ten: for estimating, processing, and visualizing diffusion tensor fields,
including fiber tractography methods.
This package provides the runtime files required to run programs
that use Teem to do 3D visualisation.
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Official Debian packages with lower relevance
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Scilab-sivp
Scilab Image and Video Processing toolbox
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| Versions of package scilab-sivp |
| Release | Version | Architectures |
| sid | 0.5.0-5 | alpha,amd64,armel,i386,ia64,mips,mipsel,powerpc,s390,sparc |
| squeeze | 0.5.0-5 | mips,amd64,sparc,armel,mipsel,i386,s390,ia64,powerpc |
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License: DFSG free
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SIVP intends to do image and video processing tasks.
SIVP is meant to be a useful, efficient, and free image and
video processing toolbox for Scilab.
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