DebiChem Project
Summary
2d structure editors
DebiChem 2D structure editors

This metapackage will install 2D structure editors which might be useful for chemists.

The list to the right includes various software projects which are of some interest to the DebiChem Project. Currently, only a few of them are available as Debian packages. It is our goal, however, to include all software in DebiChem which can sensibly add to a high quality Debian Pure Blend.

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for DebiChem to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the DebiChem mailing list

Links to other tasks

DebiChem 2d structure editors packages

Official Debian packages with high relevance

Bkchem
editor de estruturas químicas
Maintainer: Debichem Team
Versions of package bkchem
ReleaseVersionArchitectures
squeeze0.13.0-2all
wheezy0.13.0-4all
jessie0.13.0-4all
sid0.13.0-4all
Debtags of package bkchem:
fieldchemistry
roleprogram
Popcon: 42 users (28 upd.)*
Versions and Archs
License: DFSG free
Svn

BKchem é um programa livre de desenho químico escrito em Python.

Alguns dos recursos que você pode esperar:

  • Desenhar (desenhar ligação-a-ligação; modelos para anéis comuns; expansão de grupos comuns; desenha radicais, cargas, setas; suporte a cores ...)
  • Editar (capacidade ilimitada de desfazer e refazer; alinhamento; escalonamento; rotação (2D, 3D) ...)
  • Exportar/Importar (suporte completo a exportação para SVG, OpenOffice.org-Draw e EPS); suporte básico para importar e exportar CML1 e CML2)
Screenshots of package bkchem
Chemtool
chemical structures drawing program
Maintainer: Debichem Team
Versions of package chemtool
ReleaseVersionArchitectures
squeeze1.6.12-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy1.6.13-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie1.6.13-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid1.6.13-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package chemtool:
fieldchemistry
interfacex11
roleprogram
scopeapplication
uitoolkitgtk
uselearning, editing
works-withimage:vector, image
works-with-formatsvg
x11application
Popcon: 56 users (56 upd.)*
Versions and Archs
License: DFSG free
Svn

Chemtool is a GTK+ based 2D chemical structure editor for X11. It supports many bond styles, most forms of text needed for chemical typesetting and splines/arcs/curved arrows.

Drawings can be exported to MOL and PDB format, SVG or XFig format for further annotation, as a PiCTeX drawing, as a bitmap or as Postscript files (several of these through XFig's companion program transfig).

The package also contains a helper program, cht, to calculate sum formula and (exact) molecular weight from a chemtool drawing file. Cht can either be called directly by Chemtool or on the console.

Please cite: Matthias Brüstle: Chemtool - Moleküle zeichnen mit dem Pinguin. (eprint) Nachr. Chem. 49(11):1310-1313 (2001)
Screenshots of package chemtool
Easychem
desenhe moléculas de alta qualidade e fórmulas químicas 2D
Maintainer: Debichem Team
Versions of package easychem
ReleaseVersionArchitectures
squeeze0.6-6amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy0.6-7amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie0.6-8amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid0.6-8amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package easychem:
fieldchemistry
interfacex11
roleprogram
uitoolkitgtk
useviewing, learning, editing
x11application
Popcon: 37 users (78 upd.)*
Versions and Archs
License: DFSG free
Svn

EasyChem é um programa que ajuda você a criar diagramas de alta qualidade de moléculas e fórmulas 2D que podem ser exportados para PDF, PS, LaTeX e fig.

EasyChem foi originalmente desenvolvido para criar diagramas em livros de química e agora é frequentemente usado para este propósito em livros relacionados a química comerciais ou não.

Screenshots of package easychem
Gchempaint
editor de estruturas químicas 2D para a área de trabalho GNOME2
Maintainer: Debichem Team
Versions of package gchempaint
ReleaseVersionArchitectures
squeeze0.12.4-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy0.12.12-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie0.12.12-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid0.14.2-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package gchempaint:
fieldchemistry
interfacex11
roleprogram
suitegnome
uitoolkitgtk
uselearning, editing
x11application
Popcon: 44 users (40 upd.)*
Versions and Archs
License: DFSG free
Svn

GChemPaint é um editor para estruturas químicas 2D com uma interface de múltiplos documentos. Moléculas desenhadas podem ser pesquisadas no NIST Webbook e no PubChem.

Screenshots of package gchempaint
Xdrawchem
editor de estruturas e reações químicas
Maintainer: Georges Khaznadar
Versions of package xdrawchem
ReleaseVersionArchitectures
squeeze1.9.9-4.1amd64,armel,i386,ia64,mips,mipsel,powerpc,s390,sparc
wheezy2.0-2amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie2.0-2amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid2.0-2amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package xdrawchem:
fieldchemistry
interfacex11
roleprogram
uitoolkitqt
useviewing, learning, editing
x11application
Popcon: 35 users (41 upd.)*
Versions and Archs
License: DFSG free

O Xdrawchem é um editor 2D para estruturas e reações químicas. Ele espelha-se nas habilidades da suite comercial ChemDraw e possui compatibilidade de arquivos com o mesmo, assim como outros formatos químicos através do OpenBabel.

Screenshots of package xdrawchem

Packaging has started and developers might try the packaging code in VCS

Osra - wnpp
optical structure recognition application
License: free
Debian package not available
Svn
Version: 1.4.0-1

OSRA (Optical Structure Recognition Application) is a utility designed to convert graphical representations of chemical structures, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES (Simplified Molecular Input Line Entry Specification) or SD files - computer recognizable molecular structure formats. OSRA can read a document in any of the over 90 graphical formats parseable by ImageMagick - including GIF, JPEG, PNG, TIFF, PDF, PS etc., and generate the SMILES or SDF representation of the molecular structure images encountered within that document.

Remark of DebiChem team: Packaging was discussed at
*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 151825